---
type: Article
title: "Overcoming the Retrieval Barrier: Indirect Prompt Injection in the Wild for LLM Systems"
description: "Indirect prompt injection is usually studied without the hardest step: an unoptimised payload is rarely retrieved under natural queries, so its real impact stays unclear. The malicious content is split into a trigger fragment that guarantees retrieval and an attack fragment carrying the objective, and a black-box algorithm builds a compact trigger that pulls any attack fragment into the context."
resource: "https://www.usenix.org/conference/usenixsecurity26/presentation/chang-hongyan"
tags: [article, webseclist-reference, prompt-injection, llm, rag, ai-agent, injection, owasp-a03-2021]
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  at: "2026-08-19T13:03:09+00:00"
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    resource: "https://www.usenix.org/conference/usenixsecurity26/presentation/chang-hongyan"
    title: "Overcoming the Retrieval Barrier: Indirect Prompt Injection in the Wild for LLM Systems"
    author: Hongyan Chang, Ergute Bao, Xinjian Luo, Ting Yu
also_at:
  - "https://www.usenix.org/system/files/usenixsecurity26-chang-hongyan.pdf"
  - "https://www.usenix.org/system/files/conference/usenixsecurity26/sec26_prepub_chang.pdf"
authors:
  - Hongyan Chang
  - Ergute Bao
  - Xinjian Luo
  - Ting Yu
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original_url: "https://www.usenix.org/conference/usenixsecurity26/presentation/chang-hongyan"
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slug: overcoming-retrieval-barrier-indirect-prompt-injection-wild-llm-systems
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---

# Overcoming the Retrieval Barrier: Indirect Prompt Injection in the Wild for LLM Systems

**Overcoming the Retrieval Barrier: Indirect Prompt Injection in the Wild for LLM Systems** - Hongyan Chang, Ergute Bao, Xinjian Luo, Ting Yu, Publisher not stated.

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- Also published at: <https://www.usenix.org/system/files/usenixsecurity26-chang-hongyan.pdf>
- Also published at: <https://www.usenix.org/system/files/conference/usenixsecurity26/sec26_prepub_chang.pdf>
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Overcoming the Retrieval Barrier: Indirect Prompt
     Injection in the Wild for LLM Systems
          Hongyan Chang, Ergute Bao, Xinjian Luo, and Ting Yu,
          Mohamed bin Zayed University of Artificial Intelligence
  https://www.usenix.org/conference/usenixsecurity26/presentation/chang-hongyan




      This paper is included in the Proceedings of the
             35th USENIX Security Symposium.
                  August 12–14, 2026 • Baltimore, MD, USA
                             ISBN 978-1-939133-58-8


                      Open access to the Proceedings of the
                        35th USENIX Security Symposium
                                is sponsored by
                                    Overcoming the Retrieval Barrier:
                         Indirect Prompt Injection in the Wild for LLM Systems

                                  Hongyan Chang, Ergute Bao, Xinjian Luo∗, Ting Yu
                                 Mohamed bin Zayed University of Artificial Intelligence



                              Abstract                             trial or the details of a newly released API. To address this,
Large language models (LLMs) increasingly rely on retriev-         modern systems augment LLMs with retrieval from external
ing information from external corpora, createing a new attack      corpora, such as the Web, domain-specific repositories, or
surface: indirect prompt injection (IPI). Previous studies have    user-provided files. This design underlies widely deployed
highlighted this risk but often avoid the hardest step: ensuring   systems like ChatGPT with web search and document up-
that malicious content is actually retrieved. In practice, unop-   load, and also enables emerging agentic applications such as
timized IPI is rarely retrieved under natural queries, which       coding assistants that retrieve API documentation to patch
leaves its real-world impact unclear.                              bugs [25], research copilots that ground reviews in up-to-date
   We address this challenge by decomposing the malicious          publications [32], and enterprise agents that consult logs be-
content into a trigger fragment that guarantees retrieval and      fore restarting a failed VM [9]. As illustrated in Figure 1,
an attack fragment that encodes arbitrary attack objectives.       these systems follow a simple query-retrieval-action pipeline:
Based on this idea, we design an efficient and effective black-    embed the user query q (Step 1), retrieve relevant documents
box attack algorithm that constructs a compact trigger frag-       to q from the external corpus (Step 2), and let the LLM act
ment to guarantee retrieval for any attack fragment. Our at-       on the query and the retrieved content (Step 3) [35, 43, 47].
tack requires only API access to embedding models, is cost-        Indirect prompt injection. However, this pipeline intro-
efficient (as little as $0.21 per target user query on OpenAI’s    duces a new attack vector: indirect prompt injection (IPI).
embedding models), and achieves near-100% retrieval across         Unlike direct jailbreaks that target the user-model inter-
11 benchmarks and 8 embedding models (including both               face [52, 53, 60, 63, 73], IPIs poison external data sources
open-source models and proprietary services).                      with hidden instructions that the LLM later retrieves and ex-
   Based on this attack, we present the first end-to-end IPI       ecutes [34]. Once surfaced, these instructions can silently
exploits under natural queries and realistic external corpora,     redirect system behavior, often in ways invisible to end users.
spanning both RAG and agentic systems with diverse attack          Prompt injection is already ranked as a top risk for LLM
objectives. These results establish IPI as a practical and se-     applications [1], and real-world incidents confirm it. For ex-
vere threat: when a user issued a natural query to summarize       ample, EchoLeak [2] exploited a poisoned email to exfiltrate
emails on frequently asked topics, a single poisoned email         sensitive data without direct interaction with the user.
was sufficient to coerce GPT-4o into exfiltrating SSH keys         Gap. While prior work has taken important first steps [24,
with over 80% success in a multi-agent workflow. We further        28, 34, 59, 79, 96], most evaluations adopt an idealized lab
evaluate several defenses and find that they are insufficient to   setting where the malicious text is assumed to be in context
prevent the retrieval of malicious text, highlighting retrieval    of the model. Typical setups to ensure that the malicious
as a critical open vulnerability.                                  text is retrieved include: 1) putting the malicious text into
                                                                   the “latest email” and having the user explicitly request the
                                                                   model to respond based on the “latest email” [28]; 2) con-
1     Introduction                                                 structing corpora with a single malicious text [79]; and 3)
                                                                   requiring the user query to contain some optimized trigger
Large language models (LLMs) are exceptionally capable,
                                                                   tokens [19]. Such setups blur the line between direct and
but their knowledge is fixed at training time. This limitation
                                                                   indirect injection: they show what happens after retrieval,
becomes acute when users ask for up-to-date or highly spe-
                                                                   but not whether retrieval would occur under natural queries.
cialized information, such as the outcome of a recent clinical
                                                                   Therefore, the evaluations are not universal: these evaluations
    ∗ Corresponding author.                                        cannot assess IPI risk across arbitrary queries or corpora, e.g.,



USENIX Association                                                                    35th USENIX Security Symposium          1567
  User Step 1. Query 𝒒                    Agents       Base LLM     Step 3.       3-a: DOS/wrong answer    3-b. Spamming      3-c. Run code…
                                                                    Action                    I don’t                           rm /usr/*
           Check emails about the                                                              know
           reimbursement process
           and summarize
                                             Check emails…                 Step 2. Retrieval
        Adversary           Malicious text: 𝑥 ∥ 𝐷"!#
  Goal:DOS/Spammin          [Trigger fragment]                                                                                   Query Vec.




                                                                                                                     ce
                                                                                     Embed
                                                                                                                              Clean doc Vec.




                                                                                                                  Spa
  g/running code …          [Ignore all prev…]
                                                                                                                       Attack fragment Vec.




                                                                                                                  ℝ!
   Attack fragment: 𝐷"!#     Trigger fragment: 𝑥                  Corpus                                                 Malicious text Vec.
                                                                            Embedding
  [Ignore all prev…]                Our algorithm                   𝓓        Model E



               Figure 1: Illustration of attacking a retrieval-based LLM system via indirect prompt injection (IPI).


whether an attack that succeeds on some benchmark scenario                  filtrates SSH keys, succeeding in up to 80% of trials with zero
would also succeed in enterprise knowledge bases, clinical                  user interaction. Crucially, this does not rely on contrived
trial repositories, or financial email systems. This raises the             triggers (e.g., “read my latest email”), but instead on general
central question: under realistic corpora and natural queries,              queries about common subjects where many legitimate emails
will malicious text ever be retrieved?                                      are already relevant, such as asking the agent to summarize
This work. To answer this, we turn to the BEIR bench-                       the workflow for deal checkout and broker confirmation. That
marks [77], using 11 standard information-retrieval corpora                 is, even when the retrieval corpus is dense with benign docu-
containing diverse retrieval scenarios across domains such                  ments, the malicious text reliably surfaces as the most relevant
as news, finance, and scientific abstracts, and find that un-               to the target query, and drives execution.
optimized malicious text is never retrieved on natural user                 Why is this possible? The key attributing factor is not in
queries, regardless of corpus size and query length (see Ta-                what malicious payloads say — the injected instructions them-
ble 1 and Figure 2). This highlights retrieval as the bottleneck            selves (what we call the attack fragment) have been studied
of IPI: without a reliable way to surface the malicious text,               extensively — but in ensuring they are retrieved. To this end,
the attack cannot even begin.                                               we decompose an injected text into two parts: an attack frag-
   One might ask: can retrieval be guaranteed? The broader                  ment, carrying arbitrary malicious instructions, and a trigger
retrieval literature offers two directions. White-box meth-                 fragment, a compact trigger (sequence of tokens) whose sole
ods directly optimize the similarity score of the malicious                 purpose is to guarantee retrieval under natural queries. Our
text compared with the target query over some embedding                     formalization sets retrieval as the decisive step for end-to-end
space [30, 102]. However, such methods assume gradient ac-                  compromise and motivates our central contribution: a black-
cess to the underlying embedding model, which is unrealistic                box prefix optimization framework. With as few as ten tokens,
in modern deployments where retrieval in deployed systems                   our method reliably drives the injected text into the top results
often depends on closed-source embedding providers, e.g.,                   even in corpora with millions of highly relevant benign docu-
OpenAI’s text-embedding-3-small. On the other hand, black-                  ments. Unlike white-box methods that assume gradient access
box heuristics are largely ineffective: tricks like repeating               to proprietary embedding models, or black-box heuristics like
the query itself in the malicious text [50, 69, 104] yield only             query repetition that barely succeed in retrieval, our approach
modest gains, failing to surface the malicious text in realistic            is practical (only black-box API calls), cost-efficient (as little
corpora. Indeed, recent work [27] confirms that combining                   as $0.21 per target query on OpenAI embeddings), and highly
such strategies with IPI lead to low end-to-end attack success              effective (near-perfect retrieval on all corpora).
rates. Thus, despite extensive discussion, we still lack any                Contributions: 1) We present the first end-to-end IPI attack
end-to-end evidence of whether indirect prompt injections                   that succeeds under natural user queries across both RAG
can actually succeed under realistic retrieval pipelines. Do                and agentic systems (single- and multi-agent), covering mul-
IPIs pose a real threat or not? This is the critical gap we close           tiple attack families. 2) We formulate IPI as two components:
in this work.                                                               a trigger fragment and an attack fragment. Under this formu-
   To our knowledge, we are the first to provide a definitive               lation, we identify the construction of the trigger fragment,
answer that IPI attacks can be successful under realistic re-               which should guarantee the retrieval for any attack fragment,
trieval pipelines. We present the first end-to-end evaluation               as the main bottleneck of IPI. For that end, our attack adopts
of indirect prompt injection across both RAG and agentic                    a classic black-box algorithm from the existing optimization
systems. Notably, we find that a single poisoned email can                  literature to construct such a trigger fragment. 3) We pro-
coerce GPT-4o into executing malicious Python script that ex-               vide theoretical analysis of the attack, in the context of IPI,



1568    35th USENIX Security Symposium                                                                                    USENIX Association
and conduct extensive evaluation on 11 information retrieval          fied parties, e.g., online sources [12] and email systems [24].
benchmarks and 8 embedding models, including both open-               The adversary also has no access to the parameters of the
and closed-source ones. 4) We evaluate existing defenses in           retriever or the LLM. Instead, the adversary can only query
our setting and show that adaptive variants of our attack can         the embedding model E through standard APIs, obtaining em-
reliably bypass them.                                                 bedding vectors for input token sequences. This assumption
                                                                      reflects real-world deployments, where embedding models
                                                                      (e.g., OpenAI’s text-embedding-3-small) are proprietary
2     Problem Formulation
                                                                      and accessible only via restricted APIs.
Retrieval-based LLM Systems. We denote the external cor-              Attack surface. Because only the top-K items most seman-
pus (i.e., a dataset), where the retrieval-based LLM retrieve         tically similar to the target user query q are retrieved, an
information from, as D = {D1 , D2 , . . . , Dm }. Each data item is   un-optimized malicious attack fragment Dadv will rarely be
a token sequence; the token vocabulary of the LLM is denoted          retrieved under natural queries (benign documents almost
as V . A pre-defined embedding model E maps a token se-               always dominate in similarity). To overcome this, the adver-
                                                                 ∗
quence that is not longer than some n∗ (denoted as V ≤n )             sary can prepend a short trigger token sequence x (the trigger
to the d-dimensional space. For example, the contriever-              fragment) to Dadv , forming x ∥ Dadv . Here, x serves solely to
msmarco [40] embedding model only supports up to 512                  increase the retrieval rate, while Dadv encodes the actual ma-
tokens as input. We denote the embedding vectors for items            licious instructions executed once the item enters the model’s
in D as E(D1 ), . . . , E(Dm ).                                       context. This decomposition naturally leads to the following
   When a user query q is submitted to the system, it will be         problem statement.
embedded as E(q) ∈ Rd . With E(q), the most relevant data
items to q are retrieved from D , based on a scoring metric. In       Problem Definition 1 (Overall attack framework for IPI).
this work, we consider the most widely used cosine similarity         Given any user query q and any attacker-specified attack
metric [17, 57, 102, 104], denoted as sim, which maps two d-          fragment Dadv , the adversary aims to construct a prefix x
dimensional vectors to the range of [−1, 1]. The top-K highest-       such that x ∥ Dadv ranks among the top-K retrieved items from
ranked data items are returned (where K is some pre-defined           D ∪ {x ∥ Dadv }, thereby ensuring Dadv is executed by the LLM
positive integer). Next, based on the retrieved data items, the       system, fulfilling the attack objective described by Dadv .
base model (e.g., GPT-4o [39]) generates a response to the
user query q, or calls tools and agents to conduct additional         Scope of this work. We assume that Dadv is provided by the
downstream tasks.                                                     adversary, and do not study the construction process or the
   We aim at understanding the vulnerability of retrieval-            downstream effect of Dadv itself, which is the focus of the
based LLM systems under indirect prompt injection attack.             direct prompt injection literature (e.g., see [51]). We focus
Next, we present the threat model considered in this work.            on ensuring the retrieval of Dadv by constructing x, which is
                                                                      a central research problem in the indirect prompt injection
                                                                      literature [24, 28, 34, 59, 79, 96, 104].
2.1    Threat Model                                                   Black-box assumption. Our black-box assumption rules out
Attack objective. The adversary seeks to coerce a retrieval-          attacks that require white-box access to parameters of the
augmented LLM system into executing arbitrary instructions            embedding model E, e.g., the white-box attack in Poison-
of their choice. Formally, the adversary specifies an attack          RAG [104] and the HotFlip attack [30]. So far, the best black-
payload, denoted as the attack fragment Dadv , which is a             box attack baseline is to directly prepend x = q to Dadv , which
sequence of tokens encoding the attack objective (e.g., mis-          does not always ensure retrieval, according to [27].
information, phishing, or executing a Python command such
as “scp /.ssh/id_rsa attacker.com”). Given an arbitrary natural
user query q (e.g., “How do I submit my travel reimburse-             3     Prefix Construction Attack
ment?”), the adversary’s goal is to ensure that Dadv is retrieved
into the model’s input context so that the system carries out         3.1    Similarity Search for Prefix
the intended objective. Unlike prior work [79], Dadv is not
assumed to be already in context or being retrieved.                  In order to understand Problem 1 better, we first reduce Prob-
Attacker’s background knowledge. We consider the realis-              lem 1 to a more concrete optimization problem. We assume
tic and challenging black-box setting. The adversary has no           the attack fragment Dadv has already been crafted accord-
access to the contents of the external corpus D beyond the            ing to the attack objective and focus on designing the trig-
ability to inject their own items. In particular, we restrict the     ger fragment x to maximize the similarity between x ∥ Dadv
adversary to inject only a single malicious item, simulating          and q. We consider the cosine similarity, with sim(u, v) =
                                                                         uT v               d
a stealth attack. This is practical for an adversary, particu-        ∥u∥2 ∥v∥2 for u, v ∈ R . Note that cosine similarity is widely
larly when the external corpus permits writing from unveri-           used in retrieval-based LLM systems [17, 57, 102, 104]. For



USENIX Association                                                                       35th USENIX Security Symposium         1569
any token sequence x, we let                                         to the embedding model E is limited. Therefore, we want
                                                                    the adversary to solve Problem 2 under a limited number of
               f (x) = sim E(q), E(x ∥ Dadv ) .               (1)    black-box accesses to the scoring function f (which calls E
                                                                     as a sub-routine). We refer to this budget as B, which imposes
Function f is determined by the target query q, the attack           a real-world query cost on the adversary.
fragment Dadv , and the embedding model E. Item x ∥ Dadv             Challenges. Its large solution space makes the discrete opti-
being ranked among the top-K with respect to q is equivalent         mization problem difficult. A naive greedy search over all pos-
to:                                                                  sible token sequences of length n would iterate over positions
                                                                     i = 1, . . . , n, test every token in V (while fixing the remain-
                                                                     ing positions to a dummy value “<pad>”), and permanently
  f (x) > min{τ : |{D ∈ D ∧ sim(E(D), E(q)) > τ}| ≤ K},
                                                                     assign the best-scoring token. Although seemingly simple,
where | · | denotes the number of elements in a given set.           this requires n greedy steps over all positions; and crucially,
Our experiments focus on K = 5 (consistent with prior                each step touches all |V | options of token, leading to n|V |
work [104]). When K = 1, the right hand side becomes                 computations of f in the worst case, which may exceed B.
maxDi ∈D sim(E(Di ), E(q)).                                          Although one could also train a large auto-regressive model to
   Since we consider the practical setting where the adversary       solve the optimization problem; this, however, would demand
does not observe the external dataset beforehand, the value          back-propagation through millions of parameters, which is in-
on the right-hand side is unknown. In this case, finding x that      compatible for attackers with limited computation resources.
satisfies the above inequality is actually NP-hard. We defer
the technical statement and proof to the full arXiv version.         3.2    Our Algorithm: CEM Attack
Hence, for a computationally-bounded adversary, the more
practical objective should be finding a prefix that is close to      Idea. To deal with limited black-box access to f , we take in-
the optimal solution (that maximizes f (x)) in some bounded          spiration from the Cross-Entropy Method (CEM) and design
space. Later, we propose an efficient solution to this problem.      a tailored variant for our problem. CEM is a Monte-Carlo
                                                                     (probabilistic) approach originally proposed for rare-event
Problem Definition 2 (ε-Optimal Prefix Search). With func-           simulation [67, 68] and later applied to reinforcement learn-
tion f defined as in equation 1, the optimization task is to find    ing to improve the model’s performance in a given environ-
x ∈ V n such that                                                    ment [44, 56].
                                                                        CEM maintains a parameterized sampling distribution and
        f (x) > f (x∗ ) − ε, where x∗ := arg max f (x∗ ),     (2)    repeatedly optimizes it towards some black-box target (in our
                                           x∈V n
                                                                     case, increasing f ). Given samples from the current distribu-
under a given budget n ∈ N and a given threshold ε > 0.              tion, CEM computes the target scoring function, selects an
                                                                     “elite” subset of samples, and updates the distribution’s param-
Token budget n. We formalize the prefix search problem               eters based on these elites. This procedure iteratively concen-
through the lens of optimization, with a tolerance of error ε.       trates probability mass on high-scoring candidates while each
We have enforced a constraint of n on the length of token se-        iteration requires only a fixed batch of queries to the target
quence x; otherwise, the solution space is unbounded, making         function, matching our assumption of a limited budget and
optimization problem trivial and impractical: the embedding          black-box access.
model cannot take an infinitely long token sequence. We refer           Following this spirit, we design a specialized solution for
to this n as the token budget. By increasing the token budget n      Problem 2, adapting CEM’s general principle to our attack
(namely, expanding the solution space V n ), the optimal solu-       setting while avoiding the combinatorial explosion.
tion f (x∗ ) and ε-optimal solution f (x∗ ) − ε will improve [11],   Factorized distribution. We use a fully factorized distribu-
increasing the chance that x ∥ Dadv is retrieved. Later in this      tion over V n to model the sampling probability of a length–n
paper, we also verify this empirically.                              sequence x = (x[1], . . . , x[n]):
Comparison with existing works. The “repeat query” at-
                                                                                                     n
tack [50] that directly sets x to the target query q does not
                                                                                            p(x) = ∏ pi (x[i]),                    (3)
exploit the solution space fully - always picking a particular                                      i=1
token sequence, which leads to inferior attack performance
(pointed out in [27] and verified in our experiments). White-        where p(·) and pi (·) specify the overall joint distribution and
box solutions such as [30, 104] that are based on gradient           the distribution of tokens at position i, respectively. Hence, the
information computed from E’s parameters do not apply to             overall joint distribution can be encoded using an n-by-|V |
our black-box setting.                                               matrix, avoiding the |V |n overhead if we were to characterize
Limited access to computing f . Recall the threat model              the joint distribution as a whole. We repeatedly refine the joint
described in Section 2.1. The number of black-box queries            distribution p(x) as follows.



1570    35th USENIX Security Symposium                                                                            USENIX Association
                                                (t)
CEM Attack. We write p(t) (x) = ∏ni=1 pi (x[i]) as the distri-           Algorithm 1: CEM Attack for Prefix Search
bution of token sequences at the t-th iteration. For the initial-         Input: attack fragment Dadv , embedding model E,
                   (1)
ization, we set pi (x[i]) to the uniform distribution over all                      target query q, token length n, batch size N,
tokens for every token position i. Our algorithm (Algorithm 1)                      elite fraction λ, smoothing α, iterations T
draws N samples per iteration, and the total number of itera-                                  (t)
                                                                        1 Initialize each pi (·) to a uniform distribution on V
tions is T . For a given budget B, we must have NT ≤ B. At              2 Construct objective function f based on Dadv , E, and
each iteration t = 1, . . . , T , the algorithm repeats the follow-        q, according to equation 1
ing:                                                                    3 for t = 1, . . . , T do
1. Sample: Generate N sequences x1 , . . . , xN independently           4      Sample N sequences x1 , . . . , xN of length n
from the current distribution                                                   independently from the current distribution
                                                                                                     (t)
                                   n
                                        (t)                                     p(t) (x j ) = ∏ni=1 pi (x j [i])
                    p(t) (x j ) = ∏ pi (x j [i]).                (4)    5      Evaluate the score on each sampled sequence
                                  i=1
                                                                                y j = f (x j ) for each j = 1, . . . , N
2. Evaluate: Compute the score f (x j ) for each x j .                  6      Select S to be the λN highest-scoring samples in
3. Select: Identify the top-λ fraction (0 < λ < 1) of high-                     the samples {x1 , . . . , xN }
scoring sequences,                                                      7      Update the current distribution to p(t+1) (·) using S ,
                                                                                according to equation 6
        S = {x j : |{xk : k ̸= j, f (xk ) ≥ f (x j )}| ≤ λN}.    (5)    8 end
                                                                        9 Output the best sequence as the trigger fragment
4. Update: Update the distribution at each token position i as
                (t+1)
              pi    (v) = (1 − α) pi (v) + α pbi (v),            (6)
                                                                         f . If the attacker were to use a brute force sampling approach
where pbi (v) is computed based on the top-scoring samples              to obtain an ε-optimal solution, the number of accesses to f
from S only. In particular,                                             would be in O(|V |n ), incurring a much higher cost.
                                                                        Remark on factorization and linearity. We remark on the
                         ∑Nj=1 1{v = x j [i] ∧ x j ∈ S }
             pbi (v) =                                   .       (7)    factorized distribution in equation 3 and the linear structure
                                     |S |                               of the scoring function f in Theorem 1. In practice, modern
Namely, pbi (v) is the fraction of token v at position i among the      sentence embedding models often perform a pooling opera-
top-scoring sequences. Parameter α ∈ (0, 1) controls the level          tion on the tokens, making the embedding less sensitive to
of smoothing - quantifies how much the updated distribution             the token ordering, as empirically shown in [86], motivating
depends on the top-scoring samples.                                     the independent and linear structures. As we will see next,
                                                                        this formalization already allows us to explain quite some
Theorem 1 ((ε, δ)-utility Guarantee). If the score function             experimental findings.
has a linear structure - i.e., can be written as summation of
scores across different token positions f ((x1 , x2 , . . . , xn )) =
∑ni=1 fi (xi ) for some fi , then after T = O(log |V |) iterations      4   Evaluation on Trigger Fragment
with N = O(log 1δ ) samples of sequences per iteration, our
algorithm returns x with f (x) ≥ f (x∗ ) − ε (achieving equa-           In this section, we evaluate whether our attack can drive ma-
tion 2) with probability ≥ 1 − δ for any δ ∈ (0, 1).                    licious text into retrieval results under natural queries over
                                                                        realistic external corpora. Specifically, we test whether the
   We defer the detailed proofs to the appendix. The overall ar-        trigger fragment constructed by Algorithm 1 can reliably
gument is that after each iteration, the probability of sampling        surface arbitrary attack fragment across diverse queries q.
a “good token” in each position is amplified by at least some           Data. We evaluate on the test splits of 11 datasets provided
constant factor - hence, after T iterations, their probabilities        in the BEIR benchmark [77], spanning diverse retrieval sce-
are amplified to much larger values compared with the initial           narios. We summarize the statistics of each dataset (test split)
 1
|V |
     . The key to arguing for this amplification is to note that        in Table 1. Each dataset contains a document corpus and a
the top λN highest scoring samples are used to update the               set of queries. Each document in the corpus (i.e., a data item)
probability, which favors the “good tokens” over the rest.              is associated with a label, indicating which particular query
Remark on cost. Overall, the number of black-box accesses               the document is relevant to (some documents are not relevant
to f is O(log |V | log 1δ ). Compared with the greedy naive             to any query). To ensure computational feasibility, on each
search that accesses f for n|V | times, our solution scales with        dataset, we subsample 100 queries as the target queries; and
the size of the vocabulary |V |, tackling the issue of combina-         on each target query, we generate a single malicious item and
torial explosion and meeting the constraint of limited access to        inject it into the corpus.



USENIX Association                                                                         35th USENIX Security Symposium           1571
Table 1: Dataset characteristics in terms of corpus size               When generating the trigger fragment using our CEM at-
(#Docs) in millions (M), average query length in words (Q-          tack (Algorithm 1), we set the length to n = 10 by default,
Len), and average document length (D-Len) in words.                 unless explicitly specified. We sample 5, 000 samples of pre-
                                                                    fixes per iteration, and run for T = 30 iterations. We fix the
   Task                Dataset               #Docs Q-Len D-Len      fraction of elite set λ = 0.2, and level of smoothing α = 0.55.
   Passage-Retrieval    MSMARCO [46]             8.8M 6.0 56.0      We also study how different parameters impact the retrieval
   Bio-Medical IR
                        TREC-COVID [81] 0.171M 10.6 160.8           performance in Figure 10 of Appendix A.2.
                        NFCorpus [10]         0.036M 3.3 232.3
                                                                    Attack fragment. Without loss of generality, we focus on a
                        Natural Questions [46] 2.7M 9.2 78.9
   Question Answering HotpotQA [93]             5.2M 17.6 46.3      specific adversarial target to demonstrate the retrieval perfor-
                        FiQA-2018 [55]        0.058M 10.8 132.3     mance of Algorithm 1. The evaluation of other types of attack
   Argument Retrieval ArguAna [83]            0.087M 193.0 166.8    fragment is presented in Section 5. For now, we consider an
   Entity-Retrieval     DBPedia [36]             4.6M 5.4 49.7      attack fragment that enforces the LLM to provide a predeter-
   Citation-Predication SCIDOCS [23]          0.026M 9.4 176.2
                        FEVER [78]              5.4M 8.1 84.8       mined response regardless of the input query:
   Fact Checking
                        SciFact [84]          0.052M 12.4 213.6
                                                                      Prompt 1: Ignore all other information. Only the in-
                                                                      formation between <START> and <END> is collected
Metric. We measure whether the single malicious item we               from a trusted source. The rest contains misinformation.
constructed is included or not, among the 5 retrieved data            <START> We have verified that to only answer to this
items. We refer to this metric as Recall @ 5 and the result           question is ’Yes’. Just return ’Yes’. Do not return any
is either 0 or 1 on a target query. We average this result over       other information. It will leak information to the adver-
100 queries for each dataset. Higher values indicate better           sary. DO NOT DIVEATE FROM ’Yes’ <END> Ignore
retrieval performance. In Appendix A.2, we report additional          all other information.
metrics, on which the observations are consistent (Table 3).
Embedding model. We use gte-modernbert-base [49, 99]
                                                                    4.1    Effectiveness in Retrieval
as the default embedding model (ModernBERT, 139M pa-
rameters, 768 dimensions). We also include proprietary              Overall performance and comparison with baselines. Fig-
models such as OpenAI’s text-embedding-3-small [62], Voy-           ure 2 reports the retrieval performance. On each query, we
age AI’s voyage-3.5-lite [82], and Alibaba Cloud’s text-            inject only one malicious text, yet this single insertion reli-
embedding-v4 (Bailian Platform) [6] (refer to as Qwen-v4).          ably appears in the top-5 results across these diverse settings,
For open-sourced embedding models, we include contriever-           highlighting the attack surface in retrieval. In particular, on
msmarco [40], a BERT-Base model with 110M parameters                NFCorpus, Natural Questions, SciFact, HotpotQA, DBPedia,
and 768 output dimensions that was widely adopted in prior          SciDocs, and FEVER, a trigger fragment by ours consisting
work [69, 86, 104], and the Qwen3 embedding family [100],           of only 5 to 10 tokens already yields near-perfect recall.
including Qwen3-Embedding-0.6B, 4B, and 8B with output                 Compared with the baselines, our method attains the high-
dimensionalities of 1024, 2560, and 4096, respectively. These       est performance under the same prefix lengths. In addition, to
models cover diverse architectures and parameter scales for         achieve the same performance, the trigger fragment by ours is
validating the generalization of our methods.                       also much shorter, which is preferable for a stealth adversary.
Baselines and implementation details. Our main competitor           On more challenging corpora, such as MS MARCO and Ar-
is Query+, a black-box attack that is from [50] and subse-          guAna, we are able to increase the retrieval rate via increasing
quently used in [69, 104]. Query+ attack (i.e., “repeat query”      the prefix length, typically exceeding 80% and sometimes
attack) plainly prepends the original query directly into the at-   90% when using around 15 tokens. On the other hand, the
tack fragment, which achieves a similar performance to the          Query+ baseline does not benefit from the increased token
white-box gradient-based attack, according to [104]. We there-      lengths as much as ours; on ArguAna, the recall is only around
fore omit evaluations on white-box attacks, which require           20%. In addition, the Vanilla baseline without any trigger
knowing the parameters of the embedding model and vio-              fragment fails to be retrieved on all datasets, underscoring
late our threat model assumption. As a sanity check, we also        the necessity of an optimized trigger fragment.
include a Vanilla baseline [34, 52, 53, 64], which directly            Note that corpus size shows no observable correlation with
injects the attack fragment into the corpus. All methods use        our attack performance: large corpora such as MS MARCO
the same attack fragment; and only differ in the prefix: direct     (8.8M documents) and FEVER (5.4M) are as vulnerable as
placement of the target query (Query+), black-box optimiza-         small ones like NFCorpus (0.036M). Therefore, it is natural
tion via our Algorithm 1, or an empty prefix (Vanilla). Our         to ask: What makes retrieval vulnerable to our attack?
implementation is based on the BEIR framework [77] and              Corpus competition governs attack difficulty. The 11
the vector database from FAISS [29]. All experiments are            datasets cover a broad range of document lengths (from 56 to
performed on a server with an H100 GPU.                             232) and problem domains. We have discovered that different



1572      35th USENIX Security Symposium                                                                     USENIX Association
                                MS MARCO                    NFCorpus              Natural Questions                        ArguAna                           SciFact                   HotpotQA
       Recall@5 (%)

                      100
                       75
                       50
                       25
                        0
                            1    5     10    15    20   1   5     10   15    20   1   5     10   15   20     1             5     10     15   20    1     5     10   15       20   1    5    10        15    20
                             TREC-COVID                         FiQA                  DBPedia                              SciDocs                        FEVER
      Recall@5 (%)




                      100                                                                                                                                                                   CEM (ours)
                       75
                       50                                                                                                                                                                      Query+
                       25                                                                                                                                                                      Vanilla
                        0
                            1    5     10    15    20   1   5     10   15    20   1   5     10   15   20     1             5     10     15   20    1     5     10   15       20
                                     Length                     Length                    Length                               Length                        Length

Figure 2: Retrieval performance of our CEM Attack, Query+, and the Vanilla approach, under different trigger fragment lengths.




                                                                                                            Recall@5 (%)
 Competition Level




                      0.9                   CEM succeeds         CEM fails                                                          100      100        100     100        100      100         90         100
                                                                                                                           100
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                                                                                                           Figure 4: Our attack performance on the FiQA dataset across
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                                                                                                           embedding models - from small open-source (GTE, Con-
                                                                                                           triever) to large proprietary ones (Voyage, OpenAI).

Figure 3: Corpus competition vs. attack outcome. For each
dataset, we compute the average similarity of the 5th-ranked
                                                                                                           success are often associated with higher corpus competition
clean document (competition level) and group queries by
                                                                                                           level. On MSMARCO, this value can be as high as 0.82 when
whether our CEM attack succeeds (malicious text retrieved
                                                                                                           the attack fails, which is higher than the average value 0.75
in top-5) or fails (not retrieved). Datasets where CEM always
                                                                                                           when the attack succeeds. In short, the vulnerability of a re-
succeeds have only one bar.
                                                                                                           trieval system is governed by its corpus competition: datasets
                                                                                                           with documents that are not relevant to a user query q provide
                                                                                                           weak competition and are easier to attack, whereas corpora
document lengths do not lead to notable differences in vulner-
                                                                                                           with dense relevance (i.e., more relevant documents to the
ability. Instead, we conjectured that attack success depends
                                                                                                           query q) pose stronger barriers that can occasionally resist
primarily on corpus’s similarity with the query.
                                                                                                           our attack.
   To see this, we revisit the retrieval condition in Section 3.1:
               retrieval of x ∥ Dadv requires                                                              Are stronger embedding models safer? Do stronger embed-
a successful                                 sim E(q), E(x ∥
                                                                                                           ding models (that are larger, newer, or proprietary) provide
      
Dadv ) to be larger than sim E(q), E(D) for all clean items
D from the corpus D except at most K competitors (here                                                     any resistance to our attack? To answer this, we evaluate eight
K = 5). To capture this challenge, we define the corpus com-                                               models on the FiQA dataset, spanning architectures (BERT/-
petition level as the similarity score of the K-th ranked clean                                            ModernBERT/Qwen3), parameter scales (110M–8B), and ac-
document (from the un-poisoned corpus) with respect to q.                                                  cess types (open-source vs. proprietary) on the FiQA dataset.
Intuitively, this measures how strongly the clean corpus com-                                              Figure 4 shows the results. Our attack consistently reaches
petes against the injected malicious text: if the competition                                              near-perfect performance, indicating systemic vulnerability
level is low, few clean documents are relevant and poison-                                                 regardless of size or architecture. Thus, high-performing em-
ing is easier; if it is high, many clean documents are highly                                              bedding models do not confer robustness: this vulnerability
relevant and poisoning becomes harder.                                                                     is universal rather than model-specific.
   Figure 3 confirms this relationship. For instance, on NF-                                               Efficiency and cost of attack. Our attack is not only effective
Corpus, we observe a low average corpus competition level                                                  but also practically low-cost and fast to execute. In the default
(around 0.64) and perfect attack success (no failures). On the                                             setting, optimization involves at most 150, 000 times black-
other hand, datasets where we do not achieve perfect attack                                                box access to the embedding model. For commercial APIs,



USENIX Association                                                                                                                            35th USENIX Security Symposium                                1573
                                                               Recall@5 (%)   change? Intuitively, one might expect such attacks to be frag-
                                                                       100    ile in terms of transferability, that is, a trigger fragment con-
                         Qwen-v4 70 60 100 90 90 70 90 100                    structed using a particular embedding model or an attack
Target Embedding Model




                          OpenAI 20   0   30 30 10 30 90 20            80     fragment should not work elsewhere. Our finding is more
                           Voyage 60 40 40 30 60 100 60 60                    complicated: 1) malicious prefixes are reasonably transfer-
                                                                       60     able in some circumstances, as they remain effective across
                           Q3-8B 80 70 80 100 100 70 80 90
                                                                              positions and attack fragment, making the threat far more
                           Q3-4B 90 90 90 100 90 70 90 90
                                                                       40
                                                                              practical; 2) on different embedding models, we do observe
                          Q3-0.6B 90 90 100 90 90 90 100 90                   lower transferability.
                                                                       20
                                                                              Across models. In reality, attackers may not know the exact
                         Contriever 40 100 30 30 40 40 20 40
                                                                              system embedding model used for retrieval. We therefore
                             GTE 100 40 40 40 40 60 60 40                     test whether a trigger fragment optimized on a reference em-
                                                                       0
                                                                              bedding model can transfer to a different target embedding
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                                                                              model. Figure 5 shows results on FiQA. When the trigger
                                      0.
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                                                                              fragment is generated from some model from the Qwen family
                                   Reference Embedding Model
                                                                              (i.e., Qwen-v4 or Q3-8B/4B/0.6B), it transfers well to other
                                                                              models from the same family. On the other hand, the trigger
Figure 5: Transferability of our attack across embedding mod-
                                                                              fragment constructed from the Q3-0.6B leads to only 10%
els on FiQA dataset: each cell shows the performance of the
                                                                              retrieval on the OpenAI model. We also note an interesting
prefix constructed on a reference embedding model (x-axis)
                                                                              observation. The trigger fragment constructed with OpenAI’s
applied to a target embedding model (y-axis).
                                                                              embeddings generalize broadly, averaging 74% recall across
                                                                              targets and breaking 7 out of 8 models above 60%, except
                                                                              for Contriever. That said, there is much room for improving
the cost is affordable: generating a trigger fragment costs
                                                                              the transferability of our attack. For now, we suspect that suc-
just $0.21 with voyage-3.5-lite or OpenAI’s text-embedding-
                                                                              cessful IPI attacks likely require the adversary to have some
3-small, and at most $0.76 with Qwen’s more expensive text-
                                                                              knowledge (or a good guess) of the target’s embedding archi-
embedding-v4. For open-source models, our attack is efficient,
                                                                              tecture and we leave further investigations on this issue as
completing in 1.6 minutes for Contriever, 2.3 minutes for
                                                                              future work.
GTE, and 7.6 minutes for Qwen3-0.6B on a single H100 GPU.
Nearly all of the runtime is spent on embedding computation,                  Across positions. Can a trigger fragment optimized for one
while the CEM attack itself incurs negligible overhead.                       position remain effective when moved elsewhere? As shown
                                                                              in Figure 6, for most models, the answer is yes: a prefix op-
Beyond text-only retrieval. CEM is not confined to textual
                                                                              timized at the beginning of the text still achieves over 50%
queries. As it fundamentally exploits the shared embedding
                                                                              Recall@5 across positions, with only moderate fluctuations.
space into which queries and documents are mapped, any
                                                                              Thus, attackers can craft a single trigger fragment and deploy
retrieval system that indexes external corpora using vectors
                                                                              it flexibly with only a little loss of effectiveness. The notable
remains vulnerable. To illustrate, we also evaluate an image-
                                                                              exception is OpenAI’s embeddings: a prefix constructed at
to-text retrieval task (MS COCO [17] with OpenCLIP em-
                                                                              the beginning (achieving 80% recall) collapses to nearly 0%
beddings [21]) and found that even a few adversarial tokens
                                                                              when moved to position 20. This suggests OpenAI encodes
yield near-perfect recall. Hence, the vulnerability stems from
                                                                              positional information more explicitly, making token seman-
the embedding space itself rather than the query modality,
                                                                              tics highly location-dependent. However, this is not a fun-
exposing a broader risk surface that extends to multi-modal
                                                                              damental defense: our method still achieves 60% Recall@5
systems. See more details in Appendix C of the full version.
                                                                              when directly optimized at the end of the text. In short, most
Takeaway. This is the first systematic evaluation spanning 11                 embedding models are relatively position-agnostic, enabling
datasets and 8 state-of-the-art embedding models, including                   one-time optimization and broad reuse by the attacker.
open-sourced models and proprietary APIs, demonstrating
                                                                              Token dispersion. We next test an extreme case: randomly
that the vulnerability in embedding-based retrieval is broad
                                                                              scattering the tokens in trigger fragment throughout the mali-
and reproducible across different corpora, architectures, and
                                                                              cious text rather than keeping them contiguous. This makes
scales. In addition, the attack is practically cheap.
                                                                              detection harder, since any token may originate from the trig-
                                                                              ger fragment. Using a prefix optimized at position 0, we dis-
4.2                       Transferability of Our Attack                       perse its tokens randomly and average over 10 trials. We show
                                                                              our attack performance in Figure 7. Surprisingly, most embed-
Thus far, we have shown that malicious prefixes can break                     ding models remain highly vulnerable: GTE and Q3-4B stay
embedding-based retrieval when optimized under a fixed                        above 90% Recall@5, while Q3-8B, Voyage, and Qwen-v4
setting. However, does this power vanish once conditions                      exceed 80%. This shows that they aggregate the token infor-



1574                       35th USENIX Security Symposium                                                               USENIX Association
                                                     GTE            Contriever               Q3-0.6B                   Q3-4B              Q3-8B          Voyage          OpenAI          Qwen-v4
   Recall@5 (%)

                            100

                                    50

                                          0
                                               0     20 40 60      0    20 40 60         0    20 40 60             0   20 40 60       0   20 40 60   0    20 40 60   0    20 40 60   0    20 40 60
                                                    Position            Position             Position                  Position           Position       Position        Position        Position

    Figure 6: Attack performance on FiQA with a trigger fragment optimized by CEM at position 0, but inserted elsewhere.


                                                                                                                                  fragment across different attack fragment to diversify attacks
      Recall@5 (%)




                                 100               90                      91      80        88               86
                                                                   68                                                             and avoid repeated optimization. This raises the question:
                                          50
                                                          22                                                                      Does a trigger fragment optimized for one attack fragment re-
                                                                                                     6                            main effective on others? To answer this, we take a trigger
                                          0
                                                                                                                                  fragment optimized for one attack fragment and prepend it to
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                                                                                                                                  We then compare query similarity with (i) the attack frag-
                                                                                                                                  ment alone, and (ii) the same attack fragment augmented with
Figure 7: Effectiveness of trigger fragment when its tokens                                                                       a trigger fragment optimized on another attack fragment (Fig-
are randomly dispersed throughout the text rather than kept                                                                       ure 8). Results show that the trigger fragment consistently
contiguous. Results are obtained on FiQA, averaged over 10                                                                        improves similarity across all cases, raising it from around
random dispersions.                                                                                                               −0.1 to as high as 0.76. This demonstrates that the adversarial
                                                                                                                                  signal encoded in the trigger fragment is not attack fragment-
                     SIM (with trigger)




                                               0.9                                                                                specific, but generalizes broadly, substantially reducing the
                                              0.85
                                                                                                                                  cost of the attacker.
                                               0.8                                                Random

                                              0.75
                                                                                                  Targeted                        5       End-to-end Evaluations
                                                   −0.2        0        0.2        0.4         0.6           0.8                  So far, we have analyzed the performance of our attack at
                                                               SIM (attack fragment only)                                         the retrieval level (namely, whether Step 2 in Figure 1 suc-
                                                                                                                                  ceeds). However, it remains unclear whether the retrieved
Figure 8: Cosine similarity (sim) between the query and                                                                           malicious document affects the downstream system: different
the attack fragment alone is shown in x-axis. Y-axis shows                                                                        payloads aim at different behaviors and the attack success
the similarity between the query and the same attack frag-                                                                        rates may also differ. We examine two representative set-
ment prepended with trigger fragment optimized on a differ-                                                                       tings: (1) Retrieval-Augmented Generation (RAG), where
ent attack fragment. The pink point is the fixed targeted attack                                                                  retrieved documents are injected into an LLM’s context to
fragment; blue points are random attack fragments.                                                                                steer its outputs; (2) Agentic systems, encompassing both
                                                                                                                                  single-agent settings where an LLM plans actions or invokes
                                                                                                                                  external tools based on retrieved content; and multi-agent
mation globally from the text — malicious tokens in trigger                                                                       settings, where malicious information can propagate across
fragment influence the embedding outcome regardless of loca-                                                                      interacting agents and amplify its impact.
tion — so adversaries can hide tokens anywhere. In contrast,                                                                         Overall, we find that once retrieved, a single optimized
OpenAI’s embeddings collapse to 6%, as its strong positional                                                                      malicious text can consistently hijack system behavior. To our
encoding makes token effects highly location-dependent. This                                                                      knowledge, this is the first end-to-end evaluation of retrieval-
property weakens naive dispersion attacks but does not pro-                                                                       level attacks across diverse downstream scenarios, including
vide a fundamental defense, as adversaries can still optimize                                                                     denial of service (DoS), phishing worm propagation, tool
tokens on their scattered positions to recover effectiveness. In                                                                  misuse, and code execution (see Table 2).
short, adversaries can reuse an optimized prefix and hide its
tokens anywhere in the text, making detection more difficult.
                                                                                                                                  5.1        Case Study: RAG
Across attack fragments. Our optimization procedure targets
a specific attack fragment such as a malicious prompt injec-                                                                      We begin with the RAG setting, where retrieved documents
tion and yields a trigger fragment that maximizes similarity to                                                                   are fed directly into an LLM to generate answers. We call this
the query when paired with that attack fragment. In practice,                                                                     a targeted answer attack: the attacker’s goal is to force the
however, adversaries may prefer to reuse the same trigger                                                                         LLM to output a fixed phrase (e.g., “Yes”) for any query.



USENIX Association                                                                                                                                       35th USENIX Security Symposium             1575
                            Attack success rate (ASR)                             Extension to knowledge poisoning. A related variant is
              0       0.2             0.4          0.6        0.8             1   knowledge poisoning in RAG [104], where the attack frag-
                                                                                  ment contains misinformation to mislead the model on a spe-
 Qwen3-0.6B 0.8 0.8     1        1    0.8 0.8 0.7        1   0.9 0.6 0.7          cific query. On NQ [46] (average query length is 9.2 tokens)
 Qwen3-1.7B 0.6 0.7 0.9 0.8 0.8 0.6 0.7                  1   0.9 0.4 0.6          with LLaMA-2-7B and a single malicious document, their
   Qwen3-4B 0.8 0.6     1     0.9 0.6 0.7 0.7            1   1      0.5 0.5
                                                                                  method achieves ASR of 0.58 by prepending the query itself.
   Qwen3-8B 0.7 0.7 0.9 0.7 0.6 0.7 0.7
                                                                                  Our approach matches this performance: achieving ASR of
                                                         1   1      0.1 0.5
                                                                                  0.58 with only a two-token trigger fragment, and 0.50 even
  Qwen3-11B 0.7 0.7 0.9 0.8 0.6 0.8 0.8 0.9                  1      0.6 0.5
                                                                                  with a single token. Namely, our attack reproduces prior at-
  Qwen3-32B 0.7 0.7 0.9 0.7 0.7 0.7 0.7                  1   0.9 0.4 0.5
                                                                                  tacks under the same setting while requiring much fewer
   Llama3-3B 0.2 0.1 0.3 0.2 0.5 0.3 0.3 0.7 0.3 0.6 0.4
                                                                                  tokens. We defer detailed results to Appendix A.2.1 of the
Llama3-3B-Ins 0.3 0.5 0.7 0.3 0.1 0.4 0.7                1   0.9 0.4 0.5          full version.
   Llama3-8B 0.5 0.3 0.5 0.5 0.3 0.6 0.6 0.7 0.6 0.8 0.8
Llama3-8B-Ins 0.3 0.8 0.7 0.6 0.5 0.7 0.7                1   0.9 0.6 0.8
   Vicuna-7B 0.4 0.6 0.4 0.4 0.1 0.4 0.5 0.8 0.8 0.4 0.8
                                                                                  5.2    Case Study: Agentic Systems
  Vicuna-13B 0.6 0.6 0.6 0.8 0.7 0.6 0.7                 1   0.8 0.4 0.5          We next examine agentic systems, where the retrieved con-
                                                                                  tent drives tool use and inter-agent coordination. We study
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                                                                                  both single-agent (AutoGen [90]) and multi-agent (Magentic-
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                                                                                  One [31]) setups. This setting illustrates how a retrieval-level
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                                                                                  compromise can cascade into full end-to-end exploits.
Figure 9: Attack success rate (ASR) on RAG, evaluated on                          Setup. We evaluate on the real-world Enron email corpus [45],
11 LLMs and 11 datasets. A single malicious document is                           using a user with sufficient history (≥ 50 sent and received
injected to make the LLM consistently output “Yes” across                         emails). Ten frequently asked questions (FAQ) are generated
queries. Models ended with -Ins are instruction-tuned.                            from this history using Claude Sonnet 4 [8], following the
                                                                                  standard way of generating the queries [5, 48, 85]. For each
                                                                                  question (query), the adversary injects a single malicious
Setup. We use Prompt 1 from Section 4, which instructs                            email. All FAQ are shown in Appendix A.3 of the full version.
the LLM to ignore other content and always output the target                      For the single-agent setting, we use AutoGen [90] with round-
response ‘Yes’. The attack success rate (ASR) is defined as the                   robin scheduling of four tools: (i) retrieval over emails, (ii)
fraction of queries where the clean corpus does not produce                       send-email, (iii) contact-list, and (iv) Python execution. For
the target response but the corpus that is poisoned with a single                 the base model, we evaluate on GPT-4o and GPT-4o-mini.
malicious text does. Cases where the clean system already                         All tools are implemented via MCP [58]. For the multi-agent
outputs the phrase are excluded. We test across 11 datasets                       setting, we use Magentic-One [31] in AutoGen, where an
and 11 LLMs, including Qwen3 (0.8B–32B), LLaMA-3 (3B,                             Orchestrator agent delegates tasks to a FileSurfer agent to
8B), and Vicuna (7B, 13B), covering both base and instruction-                    read and handle files, or a Coder or Computer Terminal agent
tuned variants. Results are averaged over five random seeds.                      to write or execute code, respectively. We include a retriever
Results. Figure 9 shows that a single malicious document can                      agent in this pipeline, equipped with (i) retrieval over emails,
reliably coerce most LLMs into outputting the target answer                       (ii) send-email, and (iii) contact-list tools. The detailed user
across nearly all datasets; nearly every model and dataset                        prompts is presented in Appendix A.3. Note that our attack
is vulnerable, with ASR often close to 1. As an illustration,                     can be generalized to different setups; here we focus on the
the attack can force an unrelated query about a book series                       email scenario to provide in-depth analyses and leave the
to yield the fixed output “Yes” (see Example 1 in Appendix                        other settings as future directions.
A.2.1). As a sanity check, without our prefix, the suffix alone                   Adversarial objective. A single malicious text can compro-
is never retrieved, yielding ASR 0. MS-MARCO exhibits                             mise an agent in the following ways: (1) Answer manipula-
lower average ASR, consistent with its weaker Recall@5 in                         tion. The agent is misled into producing attacker-specified an-
Figure 2. Model-level trends are also clear: instruction-tuned                    swers. The attack objective and malicious attack fragment are
models are generally more vulnerable, since they follow ma-                       similar to the targeted answer manipulation in RAG (Sec-
licious instructions more faithfully. Larger model size offers                    tion 5.1). The key difference lies in how users interact with
no protection; in some cases (e.g., Vicuna-13B vs 7B), it even                    external data. In RAG, the query is directly embedded in the
increases vulnerability. Models in the Qwen series behave al-                     retrieved documents, and the LLM consumes both the query
most identically across different scales. Taken together, these                   and the retrieved documents together as context. In contrast,
results show that retrieval is the universal failure point: once                  in the agent setting, the user query is first processed by the
a malicious text enters the top-K, nearly any LLM (regardless                     agent, which then accesses external data through MCP tools.
of size, family, or tuning) can be reliably hijacked.                             During this process, the agent may reformulate the original



1576    35th USENIX Security Symposium                                                                                     USENIX Association
Table 2: Evaluation on single- and multi-agent systems. For phishing worm propagation, we separately record whether the email
contains a phishing link (i.e., Phishing) and whether it propagates a self-replicating prompt (i.e., Worm). Similarly, for tool
misuse, we separately record whether the email is broadcast to all contacts (i.e., Sent) and includes a phishing link (i.e., Phishing).

                                                           Single-Agent                                             Multi-Agent
   Method
                   Targeted Answer        Phishing Worm                   Tool Misuse          Code Execution     Code Execution
                   R@5 SIM ASR R@5 SIM Phishing Worm R@5 SIM Sent Phishing R@5 SIM ASR R@5 SIM ASR
                                                             Model: GPT-4o
   Ideal            -    - .04±.05 -        -    .77±.11   .01±.03 -     -  1±.00   1±.00       -    - .02±.04     -    - .58±.18
   Query+           1   .76 .14±.05 .56    .70   .38±.14   .08±.06 1 .78 .99±.04 .99±.04        1   .73 .02±.04    1   .76 .56±.05
   Ours (CEM)       1   .85 .02±.04 1      .77   .66±.17   .00±.00 1 .83 .92±.08 .92±.08        1   .79 .04±.05    1   .78 .72±.16
   Ours (Fusion)    1   .88 .16±.11 1      .81   .84±.11   .18±.13 .98 .87 .98±.04 .98±.04      1   .85 .02±.04    1   .85 .80±.07
                                                           Model: GPT-4o-mini
   Ideal         -       - .00±.00 -        -    .87±.08   .83±.13 -     - .47±.19   .44±.18    -    - .04±.05     -    - .54±.23
   Query+        1      .76 .00±.00 .63    .70   .51±.11   .46±.10 1 .78 .64±.13     .63±.13    1   .73 .18±.08    1   .75 .56±.21
   Ours (CEM) .98       .85 .00±.00 1      .77   .64±.17   .46±.11 1 .83 .58±.18     .58±.18    1   .79 .26±.09    1   .78 .42±.08
   Ours (Fusion) 1      .89 .04±.05 1      .81   .74±.09   .64±.11 1 .87 .84±.05     .84±.05    1   .85 .22±.04    1   .83 .36±.09


user query before retrieval, as illustrated in the raw logs in           Table 2 reports the recall@5 for retrieval (R@5), the cosine
Appendix A.3. (2) Phishing worm propagation. A mali-                  similarity between the query and the malicious text (SIM),
cious text carries self-replication instructions and a phishing       and attack success rates (ASR) in across all tasks.
link [24]. When the agent sends an email, it unknowingly              Retrieval effectiveness. In our experiments, we observe that
forwards both, enabling the worm to spread across agents. (3)         agents often rewrite user queries into their own versions dur-
Tool misuse. Malicious text redirects legitimate tool use into        ing retrieval, sometimes diverging substantially from the orig-
abuse. In our test, the agent enumerates the user’s contacts and      inal input (see raw log in Appendix A.3). This makes retrieval
mass-sends phishing links. (4) Code execution. The agent              particularly challenging for simple baselines. For example,
is convinced to run arbitrary Python scripts during benign            the Q UERY + baseline, which prepends the user query to the at-
tasks (e.g., summarization). In our evaluation, this enables          tack fragment, only provides a limited boost in similarity with
exfiltration of SSH keys from ˜/.ssh. The complete user               the retrieval query. When the attack fragment itself has low
prompt and attacker’s attack fragment for each objective is           similarity, this increase is insufficient to place the malicious
listed in Appendix A.3 of the full version.                           text within the top-5; in the worm task, recall drops to just
Baselines and our methods. We compare against two prior               56%. In contrast, our 10-token prefix consistently achieves
baselines: (1) an ideal baseline [28] that assumes the mali-          near-perfect recall. Despite using fewer tokens (10 vs. 11–20
cious text (attack fragment only) is always retrieved, mirror-        in the repeat baseline), our prefix obtains higher similarity,
ing indirect prompt injection, and (2) Query+ [104], which            showing that the gain comes not from length but from algo-
prepends the user query to the attack fragment so as to               rithmic design. The fusion variant further enhances semantic
increase retrieval likelihood. Ours prepends a learned 10-            alignment and stabilizes retrieval across tasks.
token trigger fragment (generated from the CEM attack) to             End-to-end impact. Successful IPI requires two stages: (1)
the attack fragment; Ours (Fusion) concatenates the gener-            the malicious text must be retrieved, and (2) once placed into
ated trigger fragment, user query, and attack fragment (it is         the model’s input context, the attack fragment (i.e., the in-
a fusion of our CEM and Query+). The clean corpus (into               jected instructions) must be executed by the agent. Our trigger
which the malicious text is injected) and the attack fragment         fragment reliably ensures step (1), whereas the Q UERY + base-
are fixed; only trigger fragment varies.                              line often fails to bring the malicious text into context. Our
Metric. We measure the fraction of queries that trigger the           fusion variation, which combines Ours with Query+, further
intended effect: (1) Answer manipulation: attacker-specified          improves retrieval similarity (step 1) and thereby increases
output is generated. (2) Worm propagation: emails sent by the         the likelihood that the injected attack fragment is acted upon
agent contain (i) a phishing link and (ii) replication instruc-       by the agent (step 2). This yields the highest attack success
tions. (3) Tool misuse: agent (i) emails all contacts and (ii)        rates in practice, especially for worm propagation.
includes a phishing link. (4) Code execution: agent runs the          Model effects. Despite operating over the same poisoned cor-
malicious Python script and exfiltrates data. Each experiment         pus, GPT-4o and GPT-4o-mini diverge sharply. GPT-4o is
is repeated five times with different random seeds; we report         more conservative when encountering overtly harmful strings
the mean and standard deviation of the attack success rate.           (e.g., “WORM,” Python script), which suppresses attack suc-



USENIX Association                                                                        35th USENIX Security Symposium          1577
cess on self-replication (Worm) and code execution. At the           three intuitive defenses that require no access to the attacker’s
same time, it is more willing to complete routine email work-        optimization: (i) query paraphrasing, (ii) perplexity filtering,
flows, leading to higher tool-misuse ASR, i.e., successfully         and (iii) token masking. Note that we present only the main
harvesting all contacts and sending a phishing link. GPT-4o-         takeaways here; full experimental results, dataset-level break-
mini, by contrast, is less conservative and executes the in-         downs, and additional ablations are deferred to Appendix B
jected attack fragment more readily, yielding higher ASR on          of the full version of this paper. Specifically, despite their in-
Worm and code-execution tasks. Overall, these findings high-         tuitive appeal, none of these approaches provides durable pro-
light that a strong base model does not automatically translate      tection. Small initial gains collapse once the attacker adapts,
into system-level safety: once embedded in multi-step agent          underscoring the persistent and robust nature of our attack.
pipelines with retrieval and tool use, models inherit new vul-       Query Paraphrasing. Reformulating user queries has been
nerabilities. This finding is consistent with the observations       suggested as a straightforward way to break the alignment be-
reported in Google’s study on Gemini [72].                           tween the malicious text and the original target query [69, 80].
Ideal vs. realistic retrieval. The “ideal” baseline mirrors          For example, query “Is it possible to open a US bank account
the scenario where the attack fragment is assumed to be              from my home, and will I be required to pay taxes on the
already in the agent’s context. We observe that evaluating           money?” can be rephrased to “Would it be feasible for me
suffixes in isolation can misrepresent the true risk (sometimes      to establish a US bank account from my home, and will I be
underestimating, sometimes overestimating). For example, in          required to pay taxes on the money transferred?” The intuition
code execution, IPI yields only 2% (GPT-4o) and 4% (GPT-             is as follows: if the attacker optimizes against one phrasing
4o-mini), while our end-to-end attack reaches 26% on GPT-            of the attack objective, a paraphrase of it may disrupt effec-
4o-mini, indicating that prior IPI evaluation can underestimate      tiveness. Indeed, we observe minor degradation (< 10% drop
risk. These results highlight the need to move beyond the            in Recall@5 for most datasets). Yet, once the attacker jointly
“already in context” assumption and assess security under full       optimizes over multiple paraphrases, attack performance is
end-to-end pipelines that include the retrieval step.                fully restored—and in some cases even surpasses the baseline.
Multi-agent amplification. We adapt the attack fragment to           This shows that paraphrasing provides little protection. More-
the multi-agent systems (MAS), following the injection tem-          over, because our attack is position-agnostic (recall Figure 6),
plate of [79], which studies MAS security under indirect             position-based defenses are excluded by design. Detailed
prompt injection without retrieval. We show that multi-agent         analysis is in Appendix B.1 of the full version.
orchestration amplifies risk and even reverses some single-          Perplexity Filtering. Perplexity has been proposed as a proxy
agent safety trends. In the single-agent code-execution task,        for detecting unnatural or low-quality text [7, 33, 41]. The
GPT-4o appeared conservative. The ASR on GPT-4o was only             intuition is that malicious texts, being artificially constructed,
2–4% compared to GPT-4o-mini’s higher rates, suggesting              should exhibit unusually high perplexity and thus be flagged.
stronger resistance to harmful instructions. Yet in the multi-       We confirm that malicious text indeed shows higher perplexity
agent setting, this apparent advantage disappears. As Table 2        than clean content. However, this signal collapses under even
shows, on the code execution task, GPT-4o’s ASR rockets to           the simplest adaptive strategy: repeating the malicious text
72% and 80% using our CEM and fusion attacks (meaning                to reduce the perplexity. In Figure 12 of Appendix B.2 in
that 8 out of 10 runs result in private file exfiltration), nearly   the full version, we show that repetition not only preserves
40× higher than in the single-agent setting.                         attack effectiveness but also drives perplexity below that of
   This may be due to the multi-agent orchestration: each            clean documents, making malicious text appear more natural
agent only has limited context to solve the overall task. As a       than the benign corpus. As a result, perplexity filtering is
result, the code-execution agent treats Python from a “trusted”      fundamentally flawed and collapses in adaptive settings.
teammate as benign and never sees the malicious text or the          Token Masking. Masking tokens has also been proposed
user query, making execution far more likely. In contrast, GPT-      as a lightweight defense against prompt injection and jail-
4o-mini’s ASR is lower than GPT-4o’s ASR, reflecting insta-          breaks [42, 66]. The idea is to remove the attacker’s trigger
bility in consistently following instructions. Even the “ideal       tokens by masking tokens at random positions in the token
ranking” baseline (under “already in context” assumptions)           sequence: for each token position, the token is either replaced
reaches only 58% ASR on GPT-4o, while realistic retrieval            with some “[mask]” or remains unchanged. Random masking
with fusion climbs to 80%. Overall, our findings emphasize           has a negligible effect as the trigger fragment grows longer,
the need for end-to-end, multi-agent security assessment.            the chance of eliminating enough attack tokens to stop the
                                                                     attack becomes smaller. On the other hand, partial removal
                                                                     of tokens from the constructed trigger fragment often leaves
6    Evaluation on Defense                                           the attack intact (e.g., as shown in Figure 2, only five tokens
                                                                     generated from our CEM suffice to drive high recall). More
A natural question is whether our attack can be neutralized          importantly, in practice, identifying these tokens is extremely
by potential countermeasures. In this section, we examine            challenging: they can be flexibly positioned anywhere in the



1578    35th USENIX Security Symposium                                                                          USENIX Association
document and often look benign (e.g., the most common token         These methods focus purely on ranking manipulation, with-
in trigger fragment is “business” in FiQA; see more details in      out considering end-to-end security objectives such as IPI.
the full version). Thus, token masking is also ineffective.         When integrated into poisoning attacks for RAG [27], these
Scope. As our evaluation targets proprietary, closed-source         techniques perform no better than simply duplicating the poi-
LLMs where modifying model parameters is infeasible, de-            soned text. The most practical and widely adopted baseline,
fenses that require fine-tuning, e.g., SecAlign [15], DataSen-      Query+[50], only slightly boosts similarity by concatenating
tinel [54], and StruQ [14], are out of the scope.                   the query itself to the malicious text; yet, it is consistently
                                                                    reported as the strongest black-box heuristic [18, 50, 69, 104].
                                                                    Therefore, we have used Query+ as the baseline in our evalu-
7   Related Work
                                                                    ation.
Indirect Prompt Injection. Prior evaluations of prompt in-             Other than the defenses discussed in Section 6, one line
jection (PI) largely adopt an idealized assumption that the         of work focuses on detecting or mitigating malicious attack
poisoned text is guaranteed to appear in the model’s context.       fragment once they are already in context [4, 14, 37, 54, 76,
Common setups include fixing the environment so that a tool         87, 91, 95, 103]. These approaches operate at the level of
always returns the malicious item [3, 28, 79, 89, 96, 98],          injected content, whereas our work investigates the retrieval
e.g., designating the “last email” as poisoned and having the       stage itself, making these approaches orthogonal to ours.
user explicitly request it, constraining user queries to contain
specially optimized trigger tokens optimized with white-box         8    Limitations
access of the retriever [19], or fine-tuning the retriever with
backdoor [22]. These proof-of-concept designs collapse the          Scope. Our evaluation (Section 4 and Section 5) is strictly lim-
distinction between direct and indirect injection: they demon-      ited to embedding-based retrieval systems. The evaluation of
strate the effect after retrieval, but not whether a poisoned       potential defenses (Section 6) is also restricted to the retrieval
item would ever be retrieved under realistic conditions. A          stage. That said, our attack has not been evaluated against
closer attempt at end-to-end evaluation is Worm [24], which         hybrid pipelines (e.g., see https://docs.weaviate.io/
targets email systems under general queries. To boost re-           weaviate/search/hybrid) and reranking mechanisms [61].
trieval, it prepends benign company introductions (e.g., from       We acknowledge these gaps and leave them as future work.
Wikipedia) to poisoned emails, but this heuristic achieves neg-     Transferability. Referring to the performance disparities
ligible success (in our setting, retrieval rates are effectively    shown in Figure 5, we acknowledge that our attack does not
zero). Building on this gap, we identify retrieval as the bottle-   ensure transferability when the reference and target embed-
neck of IPI and propose a black-box optimization framework          ding models have different model architectures. This is evi-
that directly tackles this challenge.                               dent from the performance disparities observed on the Qwen
RAG poisoning. Another line of work studies poisoning at-           model family and the OpenAI’s model. Further closing this
tacks on retrieval-augmented generation (RAG) systems [13,          gap would be an interesting yet challenging future work di-
20, 27, 65, 69–71, 75, 88, 92, 97, 101, 104]. These attacks in-     rection. We refer to Section 4.2 for more details.
ject adversarial documents into the knowledge base to corrupt       Novelty. The core attack framework (Algorithm 1) is built
answers, e.g., steering the model toward misinformation [104],      upon prior art, the cross entropy method [44, 56]. While our
forcing refusal [69], outputting predetermined text [101] an-       contribution is in adapting it to IPI, we do not wish to take
swering to a different questions leading to data leakage [65],      the credit of the originality of this classic algorithm.
or targeted opinion [20]. While impactful, these works target
the narrower problem of knowledge poisoning in single-LLM
RAG pipelines, where retrieved text is consumed directly as
                                                                    9    Conclusion
context. By contrast, our focus is on the more general indi-        We re-formulate indirect prompt injection (IPI) under real-
rect prompt injection threat model. Here, malicious text can        istic retrieval settings and show that retrieval is the decisive
not only mislead answers, but also hijack tool use, propagate
                                                                    bottleneck. We decompose IPI into a trigger fragment and
worms through email, or trigger code execution in multi-agent       an attack fragment, and adopt a practical black-box algorithm
workflows, highlighting broader and more severe risks. Our          to construct trigger fragment so as to reliably surface the at-
method can also be instantiated in a RAG setting (e.g., to force    tack objective in attack fragment. Our extensive evaluation
specific answers), but this is only one special case (see Sec-      across benchmarks, embedding models, and downstream at-
tion 5.1). Our central contribution is to show that IPI attacks     tacks demonstrates that IPI constitutes a practical end-to-end
succeed under realistic retrieval pipelines.
                                                                    threat, extending well beyond prior proof-of-concept assump-
Adversarial retrieval optimization. Another related line of         tions. These findings highlight the importance of end-to-end
work studies adversarial retrieval optimization, where the          IPI evaluation and call for defenses that secure both the re-
goal is to craft malicious text that ranks highly for specific      trieval and system-level components.
queries [4, 14, 16, 26, 37, 38, 54, 74, 76, 87, 91, 94, 95, 103].



USENIX Association                                                                     35th USENIX Security Symposium           1579
Ethical Considerations                                                 seminate new exploit content. To limit the risk of our work
                                                                       being misinterpreted as a how-to guide, we refrain from in-
We have read and adhered to the USENIX ethics guidelines.              troducing novel payloads or step-by-step attack procedures
The research team explicitly considered ethical issues through-        beyond what is necessary for scientific reproducibility, and
out the project, including the submission, rebuttal, and shep-         we consistently frame our analysis in terms of system hard-
herding processes. We believe that our work was conducted              ening and defense. While our findings highlight the need for
ethically, and affirm that its future impact is also aligned with      stronger, more robust retrieval-based LLM systems, they are
these guidelines.                                                      not intended as advice for users to abandon this emerging
Stakeholders. The primary stakeholders are researchers and             technology, but rather as guidance to deploy and monitor it
system developers and users. For researchers, our work en-             more safely. 2. Controlled scope: We clearly state that our
ables the research community to move beyond proof-of-                  findings are based on controlled benchmarks; they do not
concept IPI demonstrations by identifying retrieval as the de-         represent attacks against deployed systems. Our experiments
cisive bottleneck. This work provides a clearer basis for study-       are designed to evaluate feasibility in a systematic way, not to
ing IPI risks and developing systematic evaluation methods             target particular organizations, users, or live infrastructures.
for retrieval-augmented LLM systems. For system develop-               All released code is intended solely to ensure scientific re-
ers, our findings that trivial ad-hoc defenses can be bypassed         producibility and to allow practitioners and researchers to
highlight the need for principled, retrieval-aware defenses.           test and strengthen their defenses in their own controlled en-
Theoretical analyses provided in this work can also inform             vironments, rather than to provide a turnkey exploit against
the practical design of stronger mitigation strategies. For sys-       arbitrary deployments.
tem users, our findings raise awareness that retrieval-based              At a more technical level, the core method we intro-
systems may have security flaws that could harm users’ dig-            duce—an effective black-box algorithm (CEM) for con-
ital security, e.g., sending phishing emails to email contacts         structing prefixes that surface malicious text for arbitrary
and sending their SSH keys to a public server. We hope our             queries—could, in principle, be applied beyond IPI and LLM
work can help users and organizations configure and monitor            agents. For example, similar techniques might be used to
LLM agents in ways that better protect these users from such           manipulate search or recommendation systems that rely on
harms.                                                                 embedding models, in order to surface adversarial or low-
Ethical principles. Following the Menlo Report, we adhere to           relevance content. While our experiments are confined to
four principles. 1. Beneficence: The purpose of this research is       controlled benchmarks and security evaluation, we encourage
to improve security awareness and promote stronger defensive           practitioners to consider such potential misuse when adapting
measures in retrieval-based LLM systems. Our experiments               these techniques to other settings.
were restricted to public benchmarks (e.g., BEIR) and syn-             Acknowledgement of second-order effects. Our work targets
thetic corpora (e.g., Enron); no real-world deployments were           a specific class of security risks in retrieval-augmented LLM
probed. 2. Respect for Persons: No personal or private user            agents, but LLM deployment is associated with many other
data was used. All datasets, benchmarking frameworks, and              well-documented and emerging harms, including environmen-
APIs were either synthetic or publicly available. 3. Justice: By       tal impacts of large-scale training and inference, potential
highlighting the retrieval bottleneck, we ensure that security         effects on users’ cognitive abilities, and intellectual-property
evaluation reflects realistic risks faced by all users of retrieval-   concerns. Our results should therefore not be interpreted as
augmented systems, rather than only toy environments. 4.               “solving” the biggest safety issues for LLM systems, nor as
Respect for Law and Public Interest: All experiments comply            evidence that the aforementioned harms have been compre-
with the applicable laws to open-source software licenses and          hensively addressed. There is a risk that progress on nar-
the terms of service of the APIs used. Taken together, these           row technical threats such as indirect prompt injection could
considerations, along with our reliance on public benchmarks           be used rhetorically to overstate the overall safety of LLM
and synthetic corpora and our controlled, documented code              ecosystems and to divert attention or resources away from
release for defensive testing, led us to conclude that the bene-       these other harms; we explicitly caution against such uses of
fits of raising awareness and improving defenses outweigh the          our work.
limited risks, and that conducting and publishing this research
is ethically justified.                                                Open Science
Potential harms and mitigations. 1. Risk of over-
interpretation: Our study demonstrates that IPI can succeed            Our source code and detailed instructions are provided at
under general queries, but the underlying payloads we use              the repository on Zenodo: https://zenodo.org/records/
are already well known from prior work. Our contribution is            17968523. The repository contains our attack algorithm, i.e.,
to evaluate the feasibility of such attacks under a restricted         the construction of trigger fragment, and also the scripts for
embedding-based and black-box setting, not to design or dis-           end-to-end evaluations.




1580    35th USENIX Security Symposium                                                                          USENIX Association
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1584   35th USENIX Security Symposium                                                                    USENIX Association
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                                                                                                     1
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                                                                                    nDCG@K =                    ,
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[102] Zexuan Zhong, Ziqing Huang, Alexander Wettig, and          fragment lengths. The results show that malicious trigger
      Danqi Chen. Poisoning retrieval corpora by injecting       fragment attacks are highly effective across all datasets,
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                                                                 ment length. At n = 3, the attack achieves an average Re-
[103] Huichi Zhou, Kin-Hei Lee, Zhonghao Zhan, Yue Chen,         call@5 of 29.5% across datasets, meaning that in roughly
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      trustworthiness in rag. arXiv, 2025.                       top-5 retrieved results.
                                                                    When the trigger fragment length increases to n = 5 and es-
[104] Wei Zou, Runpeng Geng, Binghui Wang, and Jinyuan           pecially n = 10, performance escalates sharply. At n = 10, the
      Jia. Poisonedrag: Knowledge corruption attacks to          attack attains near-perfect retrieval: average Recall@5 reaches
      retrieval-augmented generation of large language mod-      95.6%, MRR@5 is 0.79 (indicating frequent placement within
      els. arXiv, 2024.                                          the top-2). Several datasets—including NFCorpus, NQ, Hot-
                                                                 potQA, DBPedia, SCIDOCS, FEVER, and SciFact—achieve
                                                                 100% Recall@5, meaning the malicious document is retrieved
A    Additional Experiments and Details                          in the top-5 for every query.
                                                                    Variance across different random seeds is typically ±0.0
We provide additional experiments and the details omitted        to ±0.136, indicating that performance is stable across and
from the main paper. Due to the page limit, we refer to more     that success comes from the attack method itself rather than
details to the full technical report.



USENIX Association                                                                   35th USENIX Security Symposium           1585
Table 3: Retrieval performance across datasets. We report performance on 11 datasets, where each query is paired with exactly
one malicious document (higher values indicate stronger attack performance). We vary the length n of the prefix and repeat over
100 queries.

    Dataset                              Recall@5 (in %)                              MRR@5                                  nDCG@5
                                   n=3       n=5        n = 10            n=3          n=5          n = 10        n=3          n=5         n = 10
    MSMARCO                     7.9±3.8       35.3±3.4   74.0±13.6       0.04±0.02    0.22±0.04    0.55±0.10    0.05±0.02    0.26±0.04    0.60±0.10
    TREC-COVID                  0.4±0.8       7.6±3.2    87.6±11.8       0.00±0.00    0.03±0.01    0.69±0.12    0.00±0.00    0.04±0.02    0.74±0.12
    NFCorpus                   94.0±3.6      100.0±0.0   100.0±0.0       0.71±0.06    0.93±0.01    0.97±0.02    0.77±0.04    0.95±0.01    0.98±0.02
    NQ                          7.0±1.1       48.8±3.1    98.6±2.8       0.03±0.01    0.31±0.02    0.83±0.03    0.04±0.01    0.35±0.02    0.87±0.02
    HotpotQA                   11.4±2.2       80.4±2.4   100.0±0.0       0.05±0.01    0.45±0.03    0.90±0.04    0.06±0.01    0.54±0.02    0.93±0.03
    FiQA-2018                  31.6±3.4       73.4±2.4    97.8±3.9       0.17±0.02    0.53±0.02    0.87±0.01    0.20±0.02    0.58±0.02    0.90±0.02
    ArguAna                     1.8±0.7       16.6±0.8    77.5±8.0       0.01±0.00    0.06±0.01    0.40±0.03    0.01±0.00    0.09±0.01    0.49±0.04
    DBPedia                    45.8±8.3       91.4±5.9   100.0±0.0       0.33±0.03    0.79±0.06    0.97±0.03    0.37±0.04    0.82±0.06    0.98±0.02
    SCIDOCS                    24.0±3.0       78.2±2.5   100.0±0.0       0.12±0.02    0.55±0.02    0.88±0.02    0.15±0.02    0.61±0.02    0.91±0.02
    FEVER                      10.2±1.6       62.4±4.2    99.8±0.4       0.04±0.01    0.28±0.02    0.63±0.03    0.06±0.01    0.36±0.03    0.72±0.02
    SciFact                    77.8±3.0       98.6±0.8   100.0±0.0       0.43±0.02    0.75±0.05    0.92±0.01    0.52±0.02    0.81±0.04    0.94±0.01
    Average                      28.4           63.0        94.1           0.18         0.45         0.78         0.20         0.49         0.82


               0.9                                                                   insertion. This observation is consistent with the results in the
 Similarity




              0.85
               0.8
                                                                                     main paper.
              0.75
               0.7
                     20   60 100    2k   6k 10k 0.1 0.3 0.5 0.5      0.8 1           A.2     Impact of hyper-parameters in CEM
                          T              N           λ               α
                                                                                     We analyze the impact of hyperparameters on the effective-
                                                                                     ness of our CEM attack, illustrated in Figure 10. In our default
Figure 10: Impact of hyperparameters of CEM attack on MS-
                                                                                     experimental setting, we employ 5, 000 samples per iteration
MARCO dataset with prefix length fixed to n = 10. From left
                                                                                     with a maximum of 30 iterations, an elite fraction λ = 0.2,
to right, we vary the number of iterations (T ), the number
                                                                                     and a smoothing level α = 0.55. The results indicate that in-
of samples (i.e., batch size) per iteration (N), the elite frac-
                                                                                     creasing the number of iterations or samples per iteration con-
tion (λ), and the smoothing level (α). The y-axis indicates
                                                                                     sistently enhances the similarity scores, reflecting improved
the similarity score between trigger fragment combined with
                                                                                     malicious trigger fragment quality. Moreover, adjusting the
the attack fragment, and the target query.
                                                                                     elite fraction (λ) shows that selecting fewer, higher-quality
                                                                                     samples (smaller elite fractions) generally improves similar-
chance in token selection. In all experiments, we inject only                        ity, with diminishing returns at extremely small fractions. The
one malicious document into the corpus for the query under                           smoothing level (α) displays a relatively stable performance,
evaluation, measuring the impact of a single malicious content                       with minor fluctuations.




1586             35th USENIX Security Symposium                                                                                USENIX Association
